PHASING CORRECTION Russian patent published in 2022 - IPC C12Q1/6869 G16B25/00 G16B30/00 G01J3/02 G01N21/25 

Abstract RU 2765996 C2

FIELD: biotechnology.

SUBSTANCE: disclosed is a method of determining corrected color values from image data obtained during a base recognition cycle using a sequencer and a nucleic acid sequencer. Method comprises (a) imaging a substrate comprising a plurality of regions on which nucleic acid bases are read, wherein these areas have colors representing types of nucleic bases; (b) measuring color values of a plurality of areas on said image of the substrate; (c) storing the color values in a processor buffer of one or more sequencer processors; (d) extracting color values with partial phasing of a plurality of areas, where said color values with partial phasing correction were stored in memory of sequencer during implementation of immediately preceding cycle of base recognition; (e) determining the advance phasing correction from the color values with partial phasing correction stored during the immediately preceding cycle of base recognition, and color values stored in the processor buffer; and (f) determining the corrected color values from the color values in the processor buffer, the color values with partial phasing, stored during the immediately preceding cycle, and correcting the advanced phasing. Sequencer comprises an image acquisition system, a memory device and processors configured to perform said method actions.

EFFECT: invention reduces the load on the storage device.

39 cl, 11 dwg

Similar patents RU2765996C2

Title Year Author Number
PHASING CORRECTION 2018
  • Langlua, Robert
  • Belits, Pol
RU2805952C2
SEQUENCING USING SINGLE LIGHT SOURCE AND TWO OPTICAL CHANNELS 2018
  • Langlua, Robert
  • Viseli, Dzhon
  • Lyu, Syaokhaj
RU2736384C1
METHODS AND SYSTEMS FOR OBTAINING SETS OF UNIQUE MOLECULAR INDICES WITH HETEROGENEOUS LENGTH OF MOLECULES AND CORRECTING ERRORS THEREIN 2018
  • U, Kevin
  • Chzhao, Chen
  • Chuan, Khan-Yu
  • So, Aleks
  • Tanner, Stiven
  • Gross, Stiven M.
RU2766198C2
SUPPRESSING ERRORS IN SEQUENCED DNA FRAGMENTS BY USING EXCESSIVE READING WITH UNIQUE MOLECULAR INDICES (UMI) 2016
  • Gnerre Sante
  • Tszyun Byunsok
  • Kostem Emrakh
  • Aravanis Aleks
  • So Aleks
  • Tsaj Syujyuj
  • Chzhan Chzhikhun
RU2704286C2
SEQUENCE GRAPH-BASED TOOL FOR DETERMINING VARIATION IN SHORT TANDEM REPEAT AREAS 2020
  • Dolzhenko, Egor
  • Eberle, Michael A.
RU2799654C2
HIGH-THROUGHPUT SEQUENCING WITH SEMICONDUCTOR-BASED DETECTION 2019
  • Delinger, Ditrikh
  • Aga, Ali
  • Fung, Trejsi Khelen
  • Kostem, Emra
RU2742975C1
SYSTEMS AND APPARATUSES FOR SEQUENCING WITH HIGH THROUGHPUT CAPACITY WITH DETECTION BASED ON SEMICONDUCTORS 2019
  • Delinger, Ditrikh
  • Aga, Ali
  • Fung, Trejsi Khelen
  • Kostem, Emra
  • Kheterington, Krejg
RU2755738C2
SEQUENCE GRAPH TOOL FOR DETERMINING VARIATIONS IN REGIONS OF SHORT TANDEM REPEATS 2020
  • Dolzhenko, Egor
  • Eberle, Michael A.
RU2825664C2
SYSTEM AND METHOD FOR SECONDARY ANALYSIS OF NUCLEOTIDE SEQUENCING DATA 2017
  • Garsiya, Frantsisko Khose
  • Rachi, Kome
  • Dej, Aaron
  • Karni, Majkl Dzh.
RU2741807C2
AMPLIFICATION OF NUCLEIC ACID LIBRARIES USING KINETIC EXCLUSION 2017
  • Khanter, Shon
  • Makinerni, Piter
  • Boutell, Dzhonatan
  • Bevis-Mott, Kler
RU2759690C2

RU 2 765 996 C2

Authors

Langlua, Robert

Belits, Pol

Dates

2022-02-07Published

2018-01-05Filed