METHOD FOR SAMPLE PREPARATION OF HEPATITIS B VIRUS DNA SAMPLES FOR WHOLE GENOME SEQUENCING AND OLIGONUCLEOTIDE PRIMERS FOR ITS IMPLEMENTATION Russian patent published in 2024 - IPC C12Q1/70 

Abstract RU 2818585 C1

FIELD: biotechnology; medicine; molecular biology.

SUBSTANCE: disclosed is a method for preparing DNA samples, comprising steps of: (a) isolating DNA from a biological material; (b) performing PCR using two pools of oligonucleotide primers, where for the first pool oligonucleotide primers having the structure SEQ ID NO: 1–30, and for the second pool oligonucleotide primers having the structure SEQ ID NO: 31–55; (c) purifying PCR products using magnetic particles; (d) indexing the obtained amplicons using primers containing adapter sequences SEQ ID NO: 56, 57; (e) repeated purification of PCR products using magnetic particles; (f) evaluation of PCR products obtained during amplification by means of electrophoresis. Disclosed is a pool of oligonucleotide primers for implementing the method, having the structure SEQ ID NO: 1–57, to perform the function of primers complementary to hepatitis B virus gene regions.

EFFECT: invention enables to perform sample preparation of libraries containing target fragments of hepatitis B virus (HBV) genes, by high-throughput sequencing for the purpose of searching for hepatitis B virus mutations, without reducing quality and volume of performed studies.

10 cl, 9 tbl, 4 ex

Similar patents RU2818585C1

Title Year Author Number
METHOD OF PROGNOSTIC ASSESSMENT OF DEVELOPMENT OF HEPATOCELLULAR CARCINOMA BASED ON DETERMINATION OF POLYMORPHISM OF HUMAN IFNAR-1 GENE AND A SET OF OLIGODEOXYRIBONUCLEOTIDE PRIMERS 2022
  • Ostankova Yuliya Vladimirovna
  • Totolyan Areg Artemovich
RU2811763C1
METHOD FOR DETECTING RECOMBINANT FORMS OF HEPATITIS C VIRUS AND HEPATITIS C VIRUS DRUG RESISTANCE MUTATIONS TO DIRECT ANTIVIRAL DRUGS BY POLYMERASE CHAIN REACTION WITH SUBSEQUENT SEQUENCING 2023
  • Rejngardt Diana Eduardovna
  • Semenov Aleksandr Vladimirovich
  • Ostankova Yuliya Vladimirovna
  • Totolyan Areg Artemovich
RU2824565C1
NUCLEOTIDE SEQUENCE CODING LYTICASE ENZYME, AND PANEL OF OLIGONUCLEOTIDES FOR OBTAINING SYNTHETIC NUCLEOTIDE SEQUENCE OF LYTICASE GENE 2023
  • Cherkashina Anna Sergeevna
  • Mikheeva Olga Olegovna
  • Pika Mariia Igorevna
  • Cherkashin Evgenii Aleksandrovich
  • Akimkin Vasilii Gennadevich
RU2826150C1
SET OF OLIGONUCLEOTIDE PRIMERS AND PROBES FOR SPECIES DIFFERENTIATION OF HUMAN HERPES VIRUS 6A AND HUMAN HERPES VIRUS 6B AND METHOD OF ITS USE 2022
  • Domonova Elvira Alekseevna
  • Skachkova Tatiana Sergeevna
  • Silveistrova Olga Iurevna
  • Akimkin Vasilii Gennadevich
RU2806427C1
SET OF OLIGONUCLEOTIDE PRIMERS AND PROBE FOR DETECTION OF HUMAN HERPES VIRUS 6B 2022
  • Domonova Elvira Alekseevna
  • Skachkova Tatiana Sergeevna
  • Silveistrova Olga Iurevna
  • Akimkin Vasilii Gennadevich
RU2806428C1
METHOD FOR HEPATITIS B VIRUS DNA IDENTIFICATION IN BIOLOGICAL MATERIAL WITH LOW VIRAL LOAD BASED ON TWO-STAGE PCR 2016
  • Ostankova Yuliya Vladimirovna
  • Semenov Aleksandr Vladimirovich
  • Totolyan Areg Artemovich
RU2633755C1
SET OF OLIGONUCLEOTIDE PRIMERS FOR GENOTYPING OF FUNGI OF COLLETOTRICHUM ACUTATUM SPECIES COMPLEX 2022
  • Boldyrev Stepan Vyacheslavovich
  • Samad Samiya
  • Baik Alina Svyatoslavovna
  • Kotelevtsev Ivan Sergeevich
  • Gentsbittel Loran Andre Silvan
  • Ben Sesil
RU2807352C1
METHOD FOR DETECTING MEASLES VIRUS BY REAL-TIME RT-PCR 2023
  • Dedkov Vladimir Georgievich
  • Dolgova Anna Sergeevna
  • Milashenko Ekaterina Nikolaevna
  • Shabalina Anna Vyacheslavovna
RU2822430C1
TEST SYSTEM AND METHOD OF DETECTING SPECIFIC NUCLEIC ACID FRAGMENTS OF 16 PATHOGENS USING ISOTHERMAL AMPLIFICATION REACTION 2023
  • Koshel Elena Ivanovna
  • Rubel Mariya Sergeevna
  • Berezovskaya Mariya Yurevna
  • Bobkov Gleb Alekseevich
  • Yudin Sergej Mikhajlovich
  • Keskinov Anton Arturovich
  • Makarov Valentin Vladimirovich
  • Bochkaeva Zanda Vladimirovna
RU2810751C1
METHOD OF DETECTING MONKEY POX VIRUS OF MONKEYPOX TYPE BY REAL TIME PCR (MPX AMP PS) 2023
  • Dolgova Anna Sergeevna
  • Gladkikh Anna Sergeevna
  • Shabalina Anna Vyacheslavovna
  • Shajeb Vera Abdennaserovna
  • Dedkov Vladimir Georgievich
RU2803898C1

RU 2 818 585 C1

Authors

Chanyshev Mikhail Damirovich

Khafizov Kamil Faridovich

Akimkin Vasilii Gennadevich

Vlasenko Natalia Viktorovna

Dates

2024-05-03Published

2023-09-11Filed